Added Outlet Boundary Conditions

functions.py

@@ -82,8 +82,7 @@ def periodicity(project,folder,dt,T_cyc,n_cyc,save_path):
     
     if (peak_Pdiff[-1]<=1): 
         print('The numerical simulation \'{0}\' has achieve periodicity!\nSystolic Blood Pressure (SBP):\nsecond-last cycle = {1:.2f} mmHg,\nlast cycle = {2:.2f} mmHg,\n\u0394mmHg = {3:.2f} mmHg'.format(project,peak_P[-2],peak_P[-1],peak_Pdiff[-1]))  
-        # txt = ['The numerical simulation \'{0}\' has achieve periodicity!'.format(project), 'Systolic Blood Pressure (SBP):', 'Second-last cycle = {0:.2f} mmHg'.format(peak_P[-2]), 'Last cycle = {0:.2f} mmHg'.format(peak_P[-1]), 'Delta_mmHg = {0:.2f} mmHg'.format(peak_Pdiff[-1])]
-        txt = ['The numerical simulation \'{0}\' has achieve periodicity!'.format(project), 'Systolic Blood Pressure (SBP):','Second-last cycle = {0:.2f} mmHg - Last cycle = {1:.2f} mmHg - Delta_mmHg = {2:.2f} mmHg'.format(peak_P[-2],peak_P[-1],peak_Pdiff[-1])]
+        txt = ['The numerical simulation \'{0}\' has achieved periodicity.'.format(project), 'Systolic Blood Pressure (SBP):', 'Second-last cycle = {0:.2f} mmHg'.format(peak_P[-2]), 'Last cycle = {0:.2f} mmHg'.format(peak_P[-1]), 'Delta_mmHg = {0:.2f} mmHg'.format(peak_Pdiff[-1])]
     return txt
     
 def pressure(folder,N_ts,T_cyc,dt,n_cyc,save_path):
@@ -171,5 +170,18 @@ def inlet_flow_waveform(project_folder,t_btw_rst,N_ts,dt,T_cyc,n_cyc,save_path):
     txt = '{0} time steps saved, available to visualize in ParaView.'.format(np.unique(np.round(t_pts,3)).shape[0])
     return txt
       
+
+def rcr(project_folder):
+    rcr_lines = []
+    with open (project_folder + '/rcrt.dat', "rt") as myfile:
+        for myline in myfile:
+            rcr_lines.append(myline)
+    n_out = int((len(rcr_lines)-1)/6)
+    Rc_C_Rd = np.empty([n_out,3])
+    for i in range(0,n_out):
+        Rc_C_Rd[i][0] = float(rcr_lines[2+i*6][:-1])
+        Rc_C_Rd[i][1] = float(rcr_lines[3+i*6][:-1])
+        Rc_C_Rd[i][2] = float(rcr_lines[4+i*6][:-1])
+    return Rc_C_Rd
         
         

generatePDF.py

@@ -7,7 +7,7 @@ Created on Fri Jul 17 05:34:59 2020
 
 from fpdf import FPDF
 
-def generatePDF(save_path,project,DBP,MBP,SBP,PP,Q_avg,txt1,txt2):
+def generatePDF(save_path,project,DBP,MBP,SBP,PP,Q_avg,txt1,txt2,Rc_C_Rd):
     class PDF(FPDF):
         def header(self):
             # Arial bold 15
@@ -78,7 +78,7 @@ def generatePDF(save_path,project,DBP,MBP,SBP,PP,Q_avg,txt1,txt2):
             self.add_page()
             self.section_title(num, title)
 
-    title = 'Project name: '+ project
+    title = 'Simulation Job name: '+ project
     pdf = PDF()
     pdf.set_title(title)
     pdf.set_author('Aloma Blanch Granada')
@@ -140,4 +140,27 @@ def generatePDF(save_path,project,DBP,MBP,SBP,PP,Q_avg,txt1,txt2):
     pdf.image(save_path +'/inlet_waveform.jpg', x = 40, y = 50, w = 140, h = 100, type = '', link = '')
     pdf.set_font('Arial', '', 10)
     pdf.cell(0, 5,txt2, 0, 1)
+    
+    width_cell=[30,20,110];
+    pdf.print_section(5, 'Outlet Boundary Condition Applied')
+    pdf.set_font('Arial', '', 10)
+    pdf.cell(0, 10,'3-Element Windkessel model outlet boundary condition applied in SimVascular', 0, 1)
+    pdf.cell(0, 5,' ', 0, 1)
+    pdf.set_x(50)
+    pdf.set_font('Times', '', 10)
+    pdf.cell(width_cell[2],10,'3-Element Windkessel',1,1,'C') # First header column
+    pdf.set_x(50)
+    pdf.cell(width_cell[1],10,'ROI',1,0,'C') # Second header column
+    pdf.cell(width_cell[0],10,'Rc [g/cm^4 s]',1,0,'C') # Second header column
+    pdf.cell(width_cell[0],10,'C [cm^4 s^2/g]',1,0,'C') # Second header column
+    pdf.cell(width_cell[0],10,'Rd [g/cm^4 s]',1,1,'C') # Second header 
+    # Rows
+    for i in range(0,Rc_C_Rd.shape[0]):
+        pdf.set_x(50)
+        pdf.cell(width_cell[1],10,'ROI-'+ str(i+2),1,0,'C') # First column of row 1 
+        pdf.cell(width_cell[0],10,str(Rc_C_Rd[i][0]),1,0,'C') # Second column of row 1 
+        pdf.cell(width_cell[0],10,str(Rc_C_Rd[i][1]),1,0,'C') # Third column of row 1 
+        pdf.cell(width_cell[0],10,str(Rc_C_Rd[i][2]),1,1,'C') # Third column of row 1
+
+    
     pdf.output(save_path + '/' + project + '-report.pdf', 'F')

main.py

@@ -20,7 +20,7 @@ import os.path
 # from fpdf import FPDF
 
 
-from functions import error_plot, periodicity, pressure, flow, inlet_flow_waveform
+from functions import error_plot, periodicity, pressure, flow, inlet_flow_waveform, rcr
 from generatePDF import generatePDF  
 
 
@@ -53,6 +53,9 @@ rc = float(mylines[26][18:-1])
 # Imesteps between Restarts - idx 6
 t_btw_rst = int(mylines[6][37:-1])
 
+# Extracting Outlet Boundary Conditions from - rcrt.dat fle
+Rc_C_Rd = rcr(project_folder)
+        
 # Cehcking convergency and periodicity
 error_plot(folder,dt,rc,save_path)
 txt1 = periodicity(project,folder,dt,T_cyc,n_cyc,save_path)
@@ -67,4 +70,4 @@ txt1 = periodicity(project,folder,dt,T_cyc,n_cyc,save_path)
 txt2 = inlet_flow_waveform(project_folder,t_btw_rst,N_ts,dt,T_cyc,n_cyc,save_path)
 
 # Create PDF report
-generatePDF(save_path,project,DBP,MBP,SBP,PP,Q_avg,txt1,txt2)
+generatePDF(save_path,project,DBP,MBP,SBP,PP,Q_avg,txt1,txt2,Rc_C_Rd)