External function created to generate the PDF
This commit is contained in:
Aloma Blanch
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0ac821410c
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#!/usr/bin/env python
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#!/usr/bin/env python
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"""
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Created on Thu Jul 16 15:08:27 2020
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@author: Aloma Blanch
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"""
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import numpy as np
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import numpy as np
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import matplotlib.pyplot as plt
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import matplotlib.pyplot as plt
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130
generatePDF.py
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130
generatePDF.py
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#!/usr/bin/env python
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"""
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Created on Fri Jul 17 05:34:59 2020
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@author: Aloma Blanch
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"""
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from fpdf import FPDF
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def generatePDF(save_path,project,DBP,MBP,SBP,PP,Q_avg,txt1,txt2):
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class PDF(FPDF):
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def header(self):
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# Arial bold 15
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self.set_font('Times', 'B', 15)
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# Calculate width of title and position
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w = self.get_string_width(title) + 6
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self.set_x((210 - w) / 2)
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# Colors of frame, background and text
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self.set_draw_color(211, 84, 0 )
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self.set_fill_color(249, 231, 159)
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self.set_text_color(40, 116, 166)
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# Thickness of frame (0.2 mm)
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self.set_line_width(0.2)
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# Title
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self.cell(w, 9, title, 1, 1, 'C', 1)
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# Line break
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self.ln(10)
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def footer(self):
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# Position at 1.5 cm from bottom
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self.set_y(-15)
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# Arial italic 8
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self.set_font('Times', 'I', 8)
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# Text color in gray
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self.set_text_color(128)
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# Page number
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self.cell(0, 10, 'Page ' + str(self.page_no()), 0, 0, 'C')
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def chapter_title(self, num, label):
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# Arial 12
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self.set_font('Times', '', 12)
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# Background color
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self.set_fill_color(200, 220, 255)
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# Title
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self.cell(0, 6, 'Chapter %d : %s' % (num, label), 0, 1, 'L', 1)
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# Line break
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self.ln(4)
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def section_title(self, num, label):
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# Arial 12
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self.set_font('Times', '', 12)
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# Background color
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self.set_fill_color(232, 248, 245)
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# Title
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self.cell(0, 6, 'Section %d : %s' % (num, label), 0, 1, 'L', 1)
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# Line break
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self.ln(4)
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def chapter_body(self, name):
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# Read text file
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with open(name, 'rb') as fh:
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txt = fh.read().decode('latin-1')
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# Times 12
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self.set_font('Times', '', 12)
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# Output justified text
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self.multi_cell(0, 5, txt)
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# Line break
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self.ln()
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# Mention in italics
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self.set_font('', 'I')
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self.cell(0, 5, '(end of excerpt)')
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def print_chapter(self, num, title, name):
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self.add_page()
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self.chapter_title(num, title)
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self.chapter_body(name)
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def print_section(self, num, title):
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self.add_page()
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self.section_title(num, title)
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title = 'Project name: '+ project
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pdf = PDF()
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pdf.set_title(title)
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pdf.set_author('Aloma Blanch Granada')
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pdf.print_section(1, 'Cehcking convergency and periodicity')
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pdf.image(save_path +'/Log_Last_nonlin_res_error.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
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pdf.image(save_path +'/periodicity.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
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pdf.cell(0, 10,txt1[0], 0, 1)
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pdf.cell(0, 10,txt1[1], 0, 1)
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pdf.cell(0, 10,txt1[2], 0, 1)
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pdf.print_section(2, 'Cehcking Pressures at each outlet')
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pdf.image(save_path +'/pressure.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
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width_cell=[20,30,30,30,30,30,30];
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# pfd.SetFillColor(193,229,252); # Background color of header
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# Header starts
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pdf.cell(width_cell[0],10,'ROI',1,0,'C') # First header column
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pdf.cell(width_cell[1],10,'DBP [mmHg]',1,0,'C') # Second header column
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pdf.cell(width_cell[2],10,'MBP [mmHg]',1,0,'C') # Third header column
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pdf.cell(width_cell[3],10,'SBP [mmHg]',1,0,'C') # Fourth header column
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pdf.cell(width_cell[4],10,'PP [mmHg]',1,1,'C') # Fourth header column
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# Rows
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for i in range(0,len(SBP)):
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pdf.cell(width_cell[0],10,'ROI-'+ str(i+2),1,0,'C') # First column of row 1
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pdf.cell(width_cell[1],10,str(round(DBP[i],2)),1,0,'C') # Second column of row 1
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pdf.cell(width_cell[2],10,str(round(MBP[i],2)),1,0,'C') # Third column of row 1
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pdf.cell(width_cell[3],10,str(round(SBP[i],2)),1,0,'C') # Fourth column of row 1
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pdf.cell(width_cell[4],10,str(round(PP[i],2)),1,1,'C') # Fourth column of row 1
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pdf.print_section(3, 'Cehcking Flow Rate at each outlet')
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pdf.image(save_path +'/flow.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
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width_cell=[20,60];
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# pfd.SetFillColor(193,229,252); # Background color of header
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# Header starts
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pdf.cell(width_cell[0],10,'ROI',1,0,'C') # First header column
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pdf.cell(width_cell[1],10,'Average Flow rate [mL/s]',1,1,'C') # Second header column
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# Rows
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for i in range(0,len(Q_avg)):
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pdf.cell(width_cell[0],10,'ROI-'+ str(i+2),1,0,'C')
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pdf.cell(width_cell[1],10,str(round(Q_avg[i],2)),1,1,'C')
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pdf.print_section(4, 'Cehcking Inlet Flow Waveform and time steps saved')
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pdf.image(save_path +'/inlet_waveform.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
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pdf.cell(0, 10,txt2, 0, 1)
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pdf.output(save_path + '/' + project + '-report.pdf', 'F')
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134
main.py
134
main.py
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@ -1,4 +1,9 @@
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#!/usr/bin/env python
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#!/usr/bin/env python
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"""
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Created on Thu Jul 16 15:08:27 2020
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@author: Aloma Blanch
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"""
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import numpy as np
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import numpy as np
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import matplotlib.pyplot as plt
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import matplotlib.pyplot as plt
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@ -15,7 +20,9 @@ from fpdf import FPDF
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from functions import error_plot, periodicity, pressure, flow, inlet_flow_waveform
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from functions import error_plot, periodicity, pressure, flow, inlet_flow_waveform
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from generatePDF import generatePDF
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# Selct dir
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# Selct dir
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Tk().withdraw()
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Tk().withdraw()
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folder = askdirectory()
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folder = askdirectory()
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@ -59,126 +66,5 @@ txt1 = periodicity(project,folder,dt,T_cyc,n_cyc,save_path)
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txt2 = inlet_flow_waveform(project_folder,t_btw_rst,N_ts,dt,T_cyc,n_cyc,save_path)
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txt2 = inlet_flow_waveform(project_folder,t_btw_rst,N_ts,dt,T_cyc,n_cyc,save_path)
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# # Create PDF report
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# Create PDF report
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class PDF(FPDF):
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generatePDF(save_path,project,DBP,MBP,SBP,PP,Q_avg,txt1,txt2)
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def header(self):
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# Arial bold 15
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self.set_font('Times', 'B', 15)
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# Calculate width of title and position
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w = self.get_string_width(title) + 6
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self.set_x((210 - w) / 2)
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# Colors of frame, background and text
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self.set_draw_color(211, 84, 0 )
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self.set_fill_color(249, 231, 159)
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self.set_text_color(40, 116, 166)
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# Thickness of frame (0.2 mm)
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self.set_line_width(0.2)
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# Title
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self.cell(w, 9, title, 1, 1, 'C', 1)
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# Line break
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self.ln(10)
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def footer(self):
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# Position at 1.5 cm from bottom
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self.set_y(-15)
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# Arial italic 8
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self.set_font('Times', 'I', 8)
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# Text color in gray
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self.set_text_color(128)
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# Page number
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self.cell(0, 10, 'Page ' + str(self.page_no()), 0, 0, 'C')
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def chapter_title(self, num, label):
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# Arial 12
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self.set_font('Times', '', 12)
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# Background color
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self.set_fill_color(200, 220, 255)
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# Title
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self.cell(0, 6, 'Chapter %d : %s' % (num, label), 0, 1, 'L', 1)
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# Line break
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self.ln(4)
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def section_title(self, num, label):
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# Arial 12
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self.set_font('Times', '', 12)
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# Background color
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self.set_fill_color(232, 248, 245)
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# Title
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self.cell(0, 6, 'Section %d : %s' % (num, label), 0, 1, 'L', 1)
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# Line break
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self.ln(4)
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def chapter_body(self, name):
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# Read text file
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with open(name, 'rb') as fh:
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txt = fh.read().decode('latin-1')
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# Times 12
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self.set_font('Times', '', 12)
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# Output justified text
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self.multi_cell(0, 5, txt)
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# Line break
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self.ln()
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# Mention in italics
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self.set_font('', 'I')
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self.cell(0, 5, '(end of excerpt)')
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def print_chapter(self, num, title, name):
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self.add_page()
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self.chapter_title(num, title)
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self.chapter_body(name)
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def print_section(self, num, title):
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self.add_page()
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self.section_title(num, title)
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title = 'Project name: '+ project
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pdf = PDF()
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pdf.set_title(title)
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pdf.set_author('Aloma Blanch Granada')
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pdf.print_section(1, 'Cehcking convergency and periodicity')
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pdf.image(save_path +'/Log_Last_nonlin_res_error.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
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pdf.image(save_path +'/periodicity.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
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pdf.cell(0, 10,txt1[0], 0, 1)
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pdf.cell(0, 10,txt1[1], 0, 1)
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pdf.cell(0, 10,txt1[2], 0, 1)
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pdf.print_section(2, 'Cehcking Pressures at each outlet')
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pdf.image(save_path +'/pressure.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
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width_cell=[20,30,30,30,30,30,30];
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# pfd.SetFillColor(193,229,252); # Background color of header
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# Header starts
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pdf.cell(width_cell[0],10,'ROI',1,0,'C') # First header column
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pdf.cell(width_cell[1],10,'DBP [mmHg]',1,0,'C') # Second header column
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pdf.cell(width_cell[2],10,'MBP [mmHg]',1,0,'C') # Third header column
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pdf.cell(width_cell[3],10,'SBP [mmHg]',1,0,'C') # Fourth header column
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pdf.cell(width_cell[4],10,'PP [mmHg]',1,1,'C') # Fourth header column
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# Rows
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for i in range(0,len(SBP)):
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pdf.cell(width_cell[0],10,'ROI-'+ str(i+2),1,0,'C') # First column of row 1
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pdf.cell(width_cell[1],10,str(round(DBP[i],2)),1,0,'C') # Second column of row 1
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pdf.cell(width_cell[2],10,str(round(MBP[i],2)),1,0,'C') # Third column of row 1
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pdf.cell(width_cell[3],10,str(round(SBP[i],2)),1,0,'C') # Fourth column of row 1
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pdf.cell(width_cell[4],10,str(round(PP[i],2)),1,1,'C') # Fourth column of row 1
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pdf.print_section(3, 'Cehcking Flow Rate at each outlet')
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pdf.image(save_path +'/flow.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
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width_cell=[20,60];
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# pfd.SetFillColor(193,229,252); # Background color of header
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# Header starts
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pdf.cell(width_cell[0],10,'ROI',1,0,'C') # First header column
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pdf.cell(width_cell[1],10,'Average Flow rate [mL/s]',1,1,'C') # Second header column
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# Rows
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for i in range(0,len(Q_avg)):
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pdf.cell(width_cell[0],10,'ROI-'+ str(i+2),1,0,'C')
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pdf.cell(width_cell[1],10,str(round(Q_avg[i],2)),1,1,'C')
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pdf.print_section(4, 'Cehcking Inlet Flow Waveform and time steps saved')
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pdf.image(save_path +'/inlet_waveform.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
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pdf.cell(0, 10,txt2, 0, 1)
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pdf.output(save_pdf, 'F')
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