External function created to generate the PDF
This commit is contained in:
Aloma Blanch
parent
0ac821410c
commit
ceb92aa590
|
|
@ -1,4 +1,10 @@
|
|||
#!/usr/bin/env python
|
||||
"""
|
||||
Created on Thu Jul 16 15:08:27 2020
|
||||
|
||||
@author: Aloma Blanch
|
||||
"""
|
||||
|
||||
|
||||
import numpy as np
|
||||
import matplotlib.pyplot as plt
|
||||
|
|
|
|||
130
generatePDF.py
Normal file
130
generatePDF.py
Normal file
|
|
@ -0,0 +1,130 @@
|
|||
#!/usr/bin/env python
|
||||
"""
|
||||
Created on Fri Jul 17 05:34:59 2020
|
||||
|
||||
@author: Aloma Blanch
|
||||
"""
|
||||
|
||||
from fpdf import FPDF
|
||||
|
||||
def generatePDF(save_path,project,DBP,MBP,SBP,PP,Q_avg,txt1,txt2):
|
||||
class PDF(FPDF):
|
||||
def header(self):
|
||||
# Arial bold 15
|
||||
self.set_font('Times', 'B', 15)
|
||||
# Calculate width of title and position
|
||||
w = self.get_string_width(title) + 6
|
||||
self.set_x((210 - w) / 2)
|
||||
# Colors of frame, background and text
|
||||
self.set_draw_color(211, 84, 0 )
|
||||
self.set_fill_color(249, 231, 159)
|
||||
self.set_text_color(40, 116, 166)
|
||||
# Thickness of frame (0.2 mm)
|
||||
self.set_line_width(0.2)
|
||||
# Title
|
||||
self.cell(w, 9, title, 1, 1, 'C', 1)
|
||||
# Line break
|
||||
self.ln(10)
|
||||
def footer(self):
|
||||
# Position at 1.5 cm from bottom
|
||||
self.set_y(-15)
|
||||
# Arial italic 8
|
||||
self.set_font('Times', 'I', 8)
|
||||
# Text color in gray
|
||||
self.set_text_color(128)
|
||||
# Page number
|
||||
self.cell(0, 10, 'Page ' + str(self.page_no()), 0, 0, 'C')
|
||||
|
||||
def chapter_title(self, num, label):
|
||||
# Arial 12
|
||||
self.set_font('Times', '', 12)
|
||||
# Background color
|
||||
self.set_fill_color(200, 220, 255)
|
||||
# Title
|
||||
self.cell(0, 6, 'Chapter %d : %s' % (num, label), 0, 1, 'L', 1)
|
||||
# Line break
|
||||
self.ln(4)
|
||||
|
||||
def section_title(self, num, label):
|
||||
# Arial 12
|
||||
self.set_font('Times', '', 12)
|
||||
# Background color
|
||||
self.set_fill_color(232, 248, 245)
|
||||
# Title
|
||||
self.cell(0, 6, 'Section %d : %s' % (num, label), 0, 1, 'L', 1)
|
||||
# Line break
|
||||
self.ln(4)
|
||||
|
||||
def chapter_body(self, name):
|
||||
# Read text file
|
||||
with open(name, 'rb') as fh:
|
||||
txt = fh.read().decode('latin-1')
|
||||
# Times 12
|
||||
self.set_font('Times', '', 12)
|
||||
# Output justified text
|
||||
self.multi_cell(0, 5, txt)
|
||||
# Line break
|
||||
self.ln()
|
||||
# Mention in italics
|
||||
self.set_font('', 'I')
|
||||
self.cell(0, 5, '(end of excerpt)')
|
||||
|
||||
def print_chapter(self, num, title, name):
|
||||
self.add_page()
|
||||
self.chapter_title(num, title)
|
||||
self.chapter_body(name)
|
||||
|
||||
def print_section(self, num, title):
|
||||
self.add_page()
|
||||
self.section_title(num, title)
|
||||
|
||||
title = 'Project name: '+ project
|
||||
pdf = PDF()
|
||||
pdf.set_title(title)
|
||||
pdf.set_author('Aloma Blanch Granada')
|
||||
|
||||
pdf.print_section(1, 'Cehcking convergency and periodicity')
|
||||
pdf.image(save_path +'/Log_Last_nonlin_res_error.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
|
||||
pdf.image(save_path +'/periodicity.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
|
||||
pdf.cell(0, 10,txt1[0], 0, 1)
|
||||
pdf.cell(0, 10,txt1[1], 0, 1)
|
||||
pdf.cell(0, 10,txt1[2], 0, 1)
|
||||
|
||||
pdf.print_section(2, 'Cehcking Pressures at each outlet')
|
||||
pdf.image(save_path +'/pressure.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
|
||||
|
||||
width_cell=[20,30,30,30,30,30,30];
|
||||
# pfd.SetFillColor(193,229,252); # Background color of header
|
||||
# Header starts
|
||||
pdf.cell(width_cell[0],10,'ROI',1,0,'C') # First header column
|
||||
pdf.cell(width_cell[1],10,'DBP [mmHg]',1,0,'C') # Second header column
|
||||
pdf.cell(width_cell[2],10,'MBP [mmHg]',1,0,'C') # Third header column
|
||||
pdf.cell(width_cell[3],10,'SBP [mmHg]',1,0,'C') # Fourth header column
|
||||
pdf.cell(width_cell[4],10,'PP [mmHg]',1,1,'C') # Fourth header column
|
||||
# Rows
|
||||
for i in range(0,len(SBP)):
|
||||
pdf.cell(width_cell[0],10,'ROI-'+ str(i+2),1,0,'C') # First column of row 1
|
||||
pdf.cell(width_cell[1],10,str(round(DBP[i],2)),1,0,'C') # Second column of row 1
|
||||
pdf.cell(width_cell[2],10,str(round(MBP[i],2)),1,0,'C') # Third column of row 1
|
||||
pdf.cell(width_cell[3],10,str(round(SBP[i],2)),1,0,'C') # Fourth column of row 1
|
||||
pdf.cell(width_cell[4],10,str(round(PP[i],2)),1,1,'C') # Fourth column of row 1
|
||||
|
||||
|
||||
pdf.print_section(3, 'Cehcking Flow Rate at each outlet')
|
||||
pdf.image(save_path +'/flow.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
|
||||
|
||||
width_cell=[20,60];
|
||||
# pfd.SetFillColor(193,229,252); # Background color of header
|
||||
# Header starts
|
||||
pdf.cell(width_cell[0],10,'ROI',1,0,'C') # First header column
|
||||
pdf.cell(width_cell[1],10,'Average Flow rate [mL/s]',1,1,'C') # Second header column
|
||||
# Rows
|
||||
for i in range(0,len(Q_avg)):
|
||||
pdf.cell(width_cell[0],10,'ROI-'+ str(i+2),1,0,'C')
|
||||
pdf.cell(width_cell[1],10,str(round(Q_avg[i],2)),1,1,'C')
|
||||
|
||||
|
||||
pdf.print_section(4, 'Cehcking Inlet Flow Waveform and time steps saved')
|
||||
pdf.image(save_path +'/inlet_waveform.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
|
||||
pdf.cell(0, 10,txt2, 0, 1)
|
||||
pdf.output(save_path + '/' + project + '-report.pdf', 'F')
|
||||
132
main.py
132
main.py
|
|
@ -1,4 +1,9 @@
|
|||
#!/usr/bin/env python
|
||||
"""
|
||||
Created on Thu Jul 16 15:08:27 2020
|
||||
|
||||
@author: Aloma Blanch
|
||||
"""
|
||||
|
||||
import numpy as np
|
||||
import matplotlib.pyplot as plt
|
||||
|
|
@ -15,6 +20,8 @@ from fpdf import FPDF
|
|||
|
||||
|
||||
from functions import error_plot, periodicity, pressure, flow, inlet_flow_waveform
|
||||
from generatePDF import generatePDF
|
||||
|
||||
|
||||
# Selct dir
|
||||
Tk().withdraw()
|
||||
|
|
@ -59,126 +66,5 @@ txt1 = periodicity(project,folder,dt,T_cyc,n_cyc,save_path)
|
|||
txt2 = inlet_flow_waveform(project_folder,t_btw_rst,N_ts,dt,T_cyc,n_cyc,save_path)
|
||||
|
||||
|
||||
# # Create PDF report
|
||||
class PDF(FPDF):
|
||||
def header(self):
|
||||
# Arial bold 15
|
||||
self.set_font('Times', 'B', 15)
|
||||
# Calculate width of title and position
|
||||
w = self.get_string_width(title) + 6
|
||||
self.set_x((210 - w) / 2)
|
||||
# Colors of frame, background and text
|
||||
self.set_draw_color(211, 84, 0 )
|
||||
self.set_fill_color(249, 231, 159)
|
||||
self.set_text_color(40, 116, 166)
|
||||
# Thickness of frame (0.2 mm)
|
||||
self.set_line_width(0.2)
|
||||
# Title
|
||||
self.cell(w, 9, title, 1, 1, 'C', 1)
|
||||
# Line break
|
||||
self.ln(10)
|
||||
|
||||
def footer(self):
|
||||
# Position at 1.5 cm from bottom
|
||||
self.set_y(-15)
|
||||
# Arial italic 8
|
||||
self.set_font('Times', 'I', 8)
|
||||
# Text color in gray
|
||||
self.set_text_color(128)
|
||||
# Page number
|
||||
self.cell(0, 10, 'Page ' + str(self.page_no()), 0, 0, 'C')
|
||||
|
||||
def chapter_title(self, num, label):
|
||||
# Arial 12
|
||||
self.set_font('Times', '', 12)
|
||||
# Background color
|
||||
self.set_fill_color(200, 220, 255)
|
||||
# Title
|
||||
self.cell(0, 6, 'Chapter %d : %s' % (num, label), 0, 1, 'L', 1)
|
||||
# Line break
|
||||
self.ln(4)
|
||||
|
||||
def section_title(self, num, label):
|
||||
# Arial 12
|
||||
self.set_font('Times', '', 12)
|
||||
# Background color
|
||||
self.set_fill_color(232, 248, 245)
|
||||
# Title
|
||||
self.cell(0, 6, 'Section %d : %s' % (num, label), 0, 1, 'L', 1)
|
||||
# Line break
|
||||
self.ln(4)
|
||||
|
||||
def chapter_body(self, name):
|
||||
# Read text file
|
||||
with open(name, 'rb') as fh:
|
||||
txt = fh.read().decode('latin-1')
|
||||
# Times 12
|
||||
self.set_font('Times', '', 12)
|
||||
# Output justified text
|
||||
self.multi_cell(0, 5, txt)
|
||||
# Line break
|
||||
self.ln()
|
||||
# Mention in italics
|
||||
self.set_font('', 'I')
|
||||
self.cell(0, 5, '(end of excerpt)')
|
||||
|
||||
def print_chapter(self, num, title, name):
|
||||
self.add_page()
|
||||
self.chapter_title(num, title)
|
||||
self.chapter_body(name)
|
||||
|
||||
def print_section(self, num, title):
|
||||
self.add_page()
|
||||
self.section_title(num, title)
|
||||
|
||||
title = 'Project name: '+ project
|
||||
pdf = PDF()
|
||||
pdf.set_title(title)
|
||||
pdf.set_author('Aloma Blanch Granada')
|
||||
|
||||
pdf.print_section(1, 'Cehcking convergency and periodicity')
|
||||
pdf.image(save_path +'/Log_Last_nonlin_res_error.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
|
||||
pdf.image(save_path +'/periodicity.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
|
||||
pdf.cell(0, 10,txt1[0], 0, 1)
|
||||
pdf.cell(0, 10,txt1[1], 0, 1)
|
||||
pdf.cell(0, 10,txt1[2], 0, 1)
|
||||
|
||||
pdf.print_section(2, 'Cehcking Pressures at each outlet')
|
||||
pdf.image(save_path +'/pressure.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
|
||||
|
||||
width_cell=[20,30,30,30,30,30,30];
|
||||
# pfd.SetFillColor(193,229,252); # Background color of header
|
||||
# Header starts
|
||||
pdf.cell(width_cell[0],10,'ROI',1,0,'C') # First header column
|
||||
pdf.cell(width_cell[1],10,'DBP [mmHg]',1,0,'C') # Second header column
|
||||
pdf.cell(width_cell[2],10,'MBP [mmHg]',1,0,'C') # Third header column
|
||||
pdf.cell(width_cell[3],10,'SBP [mmHg]',1,0,'C') # Fourth header column
|
||||
pdf.cell(width_cell[4],10,'PP [mmHg]',1,1,'C') # Fourth header column
|
||||
# Rows
|
||||
for i in range(0,len(SBP)):
|
||||
pdf.cell(width_cell[0],10,'ROI-'+ str(i+2),1,0,'C') # First column of row 1
|
||||
pdf.cell(width_cell[1],10,str(round(DBP[i],2)),1,0,'C') # Second column of row 1
|
||||
pdf.cell(width_cell[2],10,str(round(MBP[i],2)),1,0,'C') # Third column of row 1
|
||||
pdf.cell(width_cell[3],10,str(round(SBP[i],2)),1,0,'C') # Fourth column of row 1
|
||||
pdf.cell(width_cell[4],10,str(round(PP[i],2)),1,1,'C') # Fourth column of row 1
|
||||
|
||||
|
||||
pdf.print_section(3, 'Cehcking Flow Rate at each outlet')
|
||||
pdf.image(save_path +'/flow.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
|
||||
|
||||
width_cell=[20,60];
|
||||
# pfd.SetFillColor(193,229,252); # Background color of header
|
||||
# Header starts
|
||||
pdf.cell(width_cell[0],10,'ROI',1,0,'C') # First header column
|
||||
pdf.cell(width_cell[1],10,'Average Flow rate [mL/s]',1,1,'C') # Second header column
|
||||
# Rows
|
||||
for i in range(0,len(Q_avg)):
|
||||
pdf.cell(width_cell[0],10,'ROI-'+ str(i+2),1,0,'C')
|
||||
pdf.cell(width_cell[1],10,str(round(Q_avg[i],2)),1,1,'C')
|
||||
|
||||
|
||||
pdf.print_section(4, 'Cehcking Inlet Flow Waveform and time steps saved')
|
||||
pdf.image(save_path +'/inlet_waveform.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
|
||||
pdf.cell(0, 10,txt2, 0, 1)
|
||||
pdf.output(save_pdf, 'F')
|
||||
|
||||
# Create PDF report
|
||||
generatePDF(save_path,project,DBP,MBP,SBP,PP,Q_avg,txt1,txt2)
|
||||
Loading…
Reference in New Issue
Block a user