functions.py

@@ -9,7 +9,6 @@ import pandas as pd
 import tkinter as tk
 from statistics import mean 
 from scipy.signal import find_peaks
-import matplotlib.transforms as mtransforms
 
 
 def error_plot(folder,t_step,r_criteria,save):
@@ -119,40 +118,6 @@ def flow(folder,N_ts,T_cyc,dt,n_cyc):
     plt.show()
     return Q
     
-def inlet_flow_waveform(project_folder,t_btw_rst,N_ts,dt,T_cyc,n_cyc):
+        
-    x = np.loadtxt(project_folder+'/ROI-1.flow')
-    t = x[:,0]
-    Q = -x[:,1]
-    Nt_pts = np.linspace(t_btw_rst,N_ts,int(N_ts/t_btw_rst))
-    t_pts = Nt_pts*dt
-    # Put all the time values on a single cardiac cylce            
-    for n in range(len(t_pts)):
-        tmp=divmod(t_pts[n],T_cyc)
-        t_pts[n]=tmp[1]
-        if round(tmp[1],3) ==  0:
-            t_pts[n]=T_cyc
-    # Interpolate the flow rate to obtain the location of the point
-    Q_pts = np.interp(t_pts, t, Q)
-
-    fig, ax = plt.subplots()
-    ax.plot(t, Q, 'r')
-    ax.plot(t_pts, Q_pts, 'ob')
-    trans_offset = mtransforms.offset_copy(ax.transData, fig=fig,
-                                       x=-0, y=0.15, units='inches')
-
-    ax.set(xlabel='Time [s]', ylabel='Flow Rate - Q [mL/s]',
-       title='Inlet Flow rate Waveform - 1 cycle')
-    ax.set_ylim([-10, 90])
-    ax.spines['right'].set_visible(False)
-    ax.spines['top'].set_visible(False)
-    # Adding label to the points
-    
-    time = []
-    for i in range(0,np.unique(np.round(t_pts,3)).shape[0]):
-        time.append('$t_'+str(i+1)+'$')
-    for x, y, t in zip(t_pts[(-n_cyc-1):], Q_pts[(-n_cyc-1):], time):
-        plt.text(x, y, t, transform=trans_offset, fontsize=12)        
-    plt.show()
-            
         
         

main.py

@@ -13,7 +13,7 @@ from scipy import signal
 import statistics
 
 
-from functions import error_plot, periodicity, pressure, flow, inlet_flow_waveform
+from functions import error_plot, periodicity, pressure, flow
   
 # Selct dir 
 Tk().withdraw()
@@ -31,25 +31,25 @@ mylines = []                             # Declare an empty list named mylines.
 with open (project_folder + '/solver.inp', 'rt') as myfile: # Open lorem.txt for reading text data.
     for myline in myfile:                # For each line, stored as myline,
         mylines.append(myline)           # add its contents to mylines.
+# print(mylines)
+
+
 # Number of Timesteps - idx 3
 # Idea: remove the text to extract the number, the text part will be the same no matter the simulation
 N_ts = int(mylines[3][20:-1])
+
 # Time Step Size - idx 4
 dt = float(mylines[4][16:-1])
+
 # Residual criteria - idx 4
 rc = float(mylines[26][18:-1])
-# Imesteps between Restarts - idx 6
-t_btw_rst = int(mylines[6][37:-1])
 
 # Cehcking convergency and periodicity
 error_plot(folder,dt,rc,False)
 periodicity(project,folder,dt,T_cyc,n_cyc)
 
-# Pressure - Outlets
+# Pressure
 (DBP,MBP,SBP,PP) = pressure(folder,N_ts,T_cyc,dt,n_cyc)
  
-# Flow Rate - Outlets
+# Flow Rate
 (Q_avg) = flow(folder,N_ts,T_cyc,dt,n_cyc)
-
-# Inlet Flow Rate + and t saved
-inlet_flow_waveform(project_folder,t_btw_rst,N_ts,dt,T_cyc,n_cyc)