PDF report generation - figures, table, text

functions.py

@@ -80,7 +80,8 @@ def periodicity(project,folder,dt,T_cyc,n_cyc,save_path):
     
     if (peak_Pdiff[-1]<=1): 
         print('The numerical simulation \'{0}\' has achieve periodicity!\nSystolic Blood Pressure (SBP):\nsecond-last cycle = {1:.2f} mmHg,\nlast cycle = {2:.2f} mmHg,\n\u0394mmHg = {3:.2f} mmHg'.format(project,peak_P[-2],peak_P[-1],peak_Pdiff[-1]))  
-        txt = 'The numerical simulation \'{0}\' has achieve periodicity!\nSystolic Blood Pressure (SBP):\nsecond-last cycle = {1:.2f} mmHg,\nlast cycle = {2:.2f} mmHg,\nDelta_mmHg = {3:.2f} mmHg'.format(project,peak_P[-2],peak_P[-1],peak_Pdiff[-1])
+        # txt = ['The numerical simulation \'{0}\' has achieve periodicity!'.format(project), 'Systolic Blood Pressure (SBP):', 'Second-last cycle = {0:.2f} mmHg'.format(peak_P[-2]), 'Last cycle = {0:.2f} mmHg'.format(peak_P[-1]), 'Delta_mmHg = {0:.2f} mmHg'.format(peak_Pdiff[-1])]
+        txt = ['The numerical simulation \'{0}\' has achieve periodicity!'.format(project), 'Systolic Blood Pressure (SBP):','Second-last cycle = {0:.2f} mmHg - Last cycle = {1:.2f} mmHg - Delta_mmHg = {2:.2f} mmHg'.format(peak_P[-2],peak_P[-1],peak_Pdiff[-1])]
     return txt
     
 def pressure(folder,N_ts,T_cyc,dt,n_cyc,save_path):

main.py

@@ -22,7 +22,7 @@ folder = askdirectory()
 project_folder = os.path.dirname(folder)
 project = os.path.basename(project_folder)
 save_path = folder+'/'+project+'-report'
-# os.mkdir(save_path)
+os.mkdir(save_path)
 save_pdf = save_path + '/' + project + '-report.pdf'
 
 # Input parameters
@@ -59,23 +59,126 @@ txt1 = periodicity(project,folder,dt,T_cyc,n_cyc,save_path)
 txt2 = inlet_flow_waveform(project_folder,t_btw_rst,N_ts,dt,T_cyc,n_cyc,save_path)
 
 
-# Create PDF report
+# # Create PDF report
-pdf = FPDF('P','mm','Letter')
+class PDF(FPDF):
-pdf.add_page()
+    def header(self):
-pdf.set_font('Times', 'B', 18)
+        # Arial bold 15
-pdf.cell(200, 20, 'Project name: '+ project, 0, 1, 'C')
+        self.set_font('Times', 'B', 15)
+        # Calculate width of title and position
+        w = self.get_string_width(title) + 6
+        self.set_x((210 - w) / 2)
+        # Colors of frame, background and text
+        self.set_draw_color(211, 84, 0 )
+        self.set_fill_color(249, 231, 159)
+        self.set_text_color(40, 116, 166)
+        # Thickness of frame (0.2 mm)
+        self.set_line_width(0.2)
+        # Title
+        self.cell(w, 9, title, 1, 1, 'C', 1)
+        # Line break
+        self.ln(10)
 
-# Keep this ratio - 5.42/3.86
+    def footer(self):
-pdf.set_font('Times', '', 14)
+        # Position at 1.5 cm from bottom
-pdf.cell(200, 30, 'Cehcking convergency and periodicity:', 0, 1, 'L')
+        self.set_y(-15)
+        # Arial italic 8
+        self.set_font('Times', 'I', 8)
+        # Text color in gray
+        self.set_text_color(128)
+        # Page number
+        self.cell(0, 10, 'Page ' + str(self.page_no()), 0, 0, 'C')
+
+    def chapter_title(self, num, label):
+        # Arial 12
+        self.set_font('Times', '', 12)
+        # Background color
+        self.set_fill_color(200, 220, 255)
+        # Title
+        self.cell(0, 6, 'Chapter %d : %s' % (num, label), 0, 1, 'L', 1)
+        # Line break
+        self.ln(4)
+        
+    def section_title(self, num, label):
+        # Arial 12
+        self.set_font('Times', '', 12)
+        # Background color
+        self.set_fill_color(232, 248, 245)
+        # Title
+        self.cell(0, 6, 'Section %d : %s' % (num, label), 0, 1, 'L', 1)
+        # Line break
+        self.ln(4)
+
+    def chapter_body(self, name):
+        # Read text file
+        with open(name, 'rb') as fh:
+            txt = fh.read().decode('latin-1')
+        # Times 12
+        self.set_font('Times', '', 12)
+        # Output justified text
+        self.multi_cell(0, 5, txt)
+        # Line break
+        self.ln()
+        # Mention in italics
+        self.set_font('', 'I')
+        self.cell(0, 5, '(end of excerpt)')
+
+    def print_chapter(self, num, title, name):
+        self.add_page()
+        self.chapter_title(num, title)
+        self.chapter_body(name)
+        
+    def print_section(self, num, title):
+        self.add_page()
+        self.section_title(num, title)
+
+title = 'Project name: '+ project
+pdf = PDF()
+pdf.set_title(title)
+pdf.set_author('Aloma Blanch Granada')
+
+pdf.print_section(1, 'Cehcking convergency and periodicity')
 pdf.image(save_path +'/Log_Last_nonlin_res_error.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
 pdf.image(save_path +'/periodicity.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
-pdf.cell(200, 20, 'Cehcking Pressures at each outlet:', 0, 1, 'L')
+pdf.cell(0, 10,txt1[0], 0, 1)
+pdf.cell(0, 10,txt1[1], 0, 1)
+pdf.cell(0, 10,txt1[2], 0, 1)
+
+pdf.print_section(2, 'Cehcking Pressures at each outlet')
 pdf.image(save_path +'/pressure.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
-pdf.cell(200, 20, 'Cehcking Flow Rate at each outlet:', 0, 1, 'L')
+
+width_cell=[20,30,30,30,30,30,30];
+# pfd.SetFillColor(193,229,252); # Background color of header 
+# Header starts 
+pdf.cell(width_cell[0],10,'ROI',1,0,'C') # First header column 
+pdf.cell(width_cell[1],10,'DBP [mmHg]',1,0,'C') # Second header column
+pdf.cell(width_cell[2],10,'MBP [mmHg]',1,0,'C') # Third header column 
+pdf.cell(width_cell[3],10,'SBP [mmHg]',1,0,'C') # Fourth header column
+pdf.cell(width_cell[4],10,'PP [mmHg]',1,1,'C') # Fourth header column
+# Rows
+for i in range(0,len(SBP)):
+	pdf.cell(width_cell[0],10,'ROI-'+ str(i+2),1,0,'C') # First column of row 1 
+	pdf.cell(width_cell[1],10,str(round(DBP[i],2)),1,0,'C') # Second column of row 1 
+	pdf.cell(width_cell[2],10,str(round(MBP[i],2)),1,0,'C') # Third column of row 1 
+	pdf.cell(width_cell[3],10,str(round(SBP[i],2)),1,0,'C') # Fourth column of row 1 
+	pdf.cell(width_cell[4],10,str(round(PP[i],2)),1,1,'C') # Fourth column of row 1 
+
+
+pdf.print_section(3, 'Cehcking Flow Rate at each outlet')
 pdf.image(save_path +'/flow.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
 
+width_cell=[20,60];
+# pfd.SetFillColor(193,229,252); # Background color of header 
+# Header starts 
+pdf.cell(width_cell[0],10,'ROI',1,0,'C') # First header column 
+pdf.cell(width_cell[1],10,'Average Flow rate [mL/s]',1,1,'C') # Second header column
+# Rows
+for i in range(0,len(Q_avg)):
+    pdf.cell(width_cell[0],10,'ROI-'+ str(i+2),1,0,'C')
+    pdf.cell(width_cell[1],10,str(round(Q_avg[i],2)),1,1,'C')
+
+    
+pdf.print_section(4, 'Cehcking Inlet Flow Waveform and time steps saved')
 pdf.image(save_path +'/inlet_waveform.jpg', x = None, y = None, w = 140, h = 100, type = '', link = '')
-
+pdf.cell(0, 10,txt2, 0, 1)
-
 pdf.output(save_pdf, 'F')
+